ORB5X 1.0.0
Performance-portable global electromagnetic gyrokinetic PIC code
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orb5x::Diagnostics Member List

This is the complete list of members for orb5x::Diagnostics, including all inherited members.

accumulate_diagnostics(int isp, Real wt, Real w3t, Real pt, Real pvolgc, Real ze, Real zf0, Real sigmat, Real q_vgc_dot_genelec, Real q_dvpadt0_dot_gyroapar)orb5x::Diagnosticsstatic
accumulate_displacements(int isp, bool in_ksieta, Real chit_cos, Real chit_sin, Real sigmat, const std::array< Real, 3 > &tempd, const std::array< Real, 3 > &vgc, const std::array< Real, 3 > &vexb, Real dvpadt1, Real dvpadt0, Real rhs, bool nl_directdf)orb5x::Diagnosticsstatic
accumulate_flux1d_f0(int isp, int irloc, Real zf0, Real dPsidt1, Real dPsidt0, Real ze, Real ut, Real rt2, const std::vector< Real > &vpar)orb5x::Diagnosticsstatic
accumulate_flux1d_w(int isp, int irloc, Real wt, Real dPsidt1, Real dPsidt0, Real ze, Real ut, Real rt2, const std::vector< Real > &vpar)orb5x::Diagnosticsstatic
accumulate_moment1d_f(int isp, int irloc, Real zf0, Real wt, Real ut, Real ut2, Real vpt2)orb5x::Diagnosticsstatic
accumulate_moment1d_f0(int isp, int irloc, Real zf0, Real ut, Real ut2, Real vpt2, Real rt2, const std::vector< Real > &vpar, const std::vector< Real > &vexb, Real b)orb5x::Diagnosticsstatic
accumulate_moment1d_w(int isp, int irloc, Real zf0, Real wt, Real ut, Real ut2, Real vpt2, Real rt2, const std::vector< Real > &vpar, const std::vector< Real > &vexb, Real b, Real jdote_tot)orb5x::Diagnosticsstatic
add_efield(int isp, int component, Real value)orb5x::Diagnosticsstatic
add_efield_av(int isp, int component, Real value)orb5x::Diagnosticsstatic
add_to_0d_vexbnavg(int isp, Real to_add)orb5x::Diagnosticsstatic
add_to_entropy_fluct(int isp, int idiag, Real value)orb5x::Diagnosticsstatic
add_to_jdote_bg(int isp, int idiag, Real value)orb5x::Diagnosticsstatic
add_to_jdote_fluct(int isp, int idiag, Real value)orb5x::Diagnosticsstatic
add_trap_frac(int isp, int type, Real value)orb5x::Diagnosticsstatic
apalocorb5x::Diagnosticsinlinestatic
append_placeholder_slices(int step, Real time)orb5x::Diagnosticsstatic
append_scalar(const std::string &path, const Real *values, size_t count)orb5x::Diagnosticsstatic
append_stat_int(const std::string &path, const int *array, size_t count)orb5x::Diagnosticsstatic
clear_diagnostics(int isp)orb5x::Diagnosticsstatic
clear_entropy_diag(int isp)orb5x::Diagnosticsstatic
clear_jdote(int isp)orb5x::Diagnosticsstatic
clear_jdote_fluct(int isp)orb5x::Diagnosticsstatic
createg_1D(const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name)orb5x::Diagnosticsstatic
createg_1Dms(const std::string &species_name, const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name)orb5x::Diagnosticsstatic
createg_2D(const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name)orb5x::Diagnosticsstatic
createg_2Dms(const std::string &species_name, const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name)orb5x::Diagnosticsstatic
createg_3D(const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name, const std::vector< Real > &coord3, const std::string &coord3_name)orb5x::Diagnosticsstatic
createg_3Dms(const std::string &species_name, const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name, const std::vector< Real > &coord3, const std::string &coord3_name, const std::vector< std::vector< int > > *mmin_f=nullptr)orb5x::Diagnosticsstatic
createg_3Dz(const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name, const std::vector< Real > &coord3, const std::string &coord3_name, const std::vector< std::vector< int > > *mmin_f=nullptr)orb5x::Diagnosticsstatic
createg_3Dzms(const std::string &species_name, const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name, const std::vector< Real > &coord3, const std::string &coord3_name, const std::vector< std::vector< int > > *mmin_f=nullptr)orb5x::Diagnosticsstatic
destroyStaticViews()orb5x::Diagnosticsstatic
diag3d_on_fluid_moments(int isp)orb5x::Diagnosticsstatic
diag3d_spectrum(const std::vector< std::vector< std::vector< Real > > > &field, std::vector< std::vector< Real > > &spectrum_out, int nmax)orb5x::Diagnosticsstatic
diag_fields_torpol(int fieldnum, Real time)orb5x::Diagnosticsstatic
diag_fields_torpol_init()orb5x::Diagnosticsstatic
diag_fulltorus(int fieldnum, Real time)orb5x::Diagnosticsstatic
diag_fulltorus_init()orb5x::Diagnosticsstatic
diagnose(int step, int step_tot, Real time)orb5x::Diagnosticsstatic
diagnose_phasespace(int isp, Real s, Real vpar, Real mu, Real B, Real pvol, Real w, Real zf0)orb5x::Diagnosticsstatic
diagnose_sampling(int isp, Real s, Real en, Real pvol, Real w, Real zf0)orb5x::Diagnosticsstatic
Diagnostics()orb5x::Diagnosticsinline
diagnostics_after_loop(int isp)orb5x::Diagnosticsstatic
displacement_avg_ref()orb5x::Diagnosticsstatic
displacement_exb_avg_ref()orb5x::Diagnosticsstatic
displacement_exb_max_ref()orb5x::Diagnosticsstatic
displacement_max_ref()orb5x::Diagnosticsstatic
electron_fluxes_moments(int isp, int irloc, Real zf0, Real dPsidt1, Real dPsidt0, Real ze, Real wt, Real ffinit_tmp1, Real ffinit_tmp2, Real ffinit_tmp3, Real ffinit_tmp4, bool is_trapped)orb5x::Diagnosticsstatic
entropy_fluct_avg_ref()orb5x::Diagnosticsstatic
FIELD_APARorb5x::Diagnosticsstatic
FIELD_APAR_HAMorb5x::Diagnosticsstatic
FIELD_APAR_SYMPLorb5x::Diagnosticsstatic
FIELD_DENSorb5x::Diagnosticsstatic
FIELD_PHIorb5x::Diagnosticsstatic
FIELD_USERorb5x::Diagnosticsstatic
fluid_moments_ref()orb5x::Diagnosticsstatic
flush0d()orb5x::Diagnosticsstatic
flux1d_f0_ref()orb5x::Diagnosticsstatic
flux1d_w_ref()orb5x::Diagnosticsstatic
get_adiab(int isp)orb5x::Diagnosticsstatic
get_buf()orb5x::Diagnosticsinlinestatic
get_buf_pic()orb5x::Diagnosticsinlinestatic
get_cum_non_cg_bins(int isp)orb5x::Diagnosticsstatic
get_cum_non_cg_markers(int isp)orb5x::Diagnosticsstatic
get_dSdt_heat(int isp)orb5x::Diagnosticsstatic
get_dSdt_nc(int isp)orb5x::Diagnosticsstatic
get_dSdt_nc_corr(int isp)orb5x::Diagnosticsstatic
get_efield(int isp, int component)orb5x::Diagnosticsstatic
get_efield_av(int isp, int component)orb5x::Diagnosticsstatic
get_efield_fft(int isp, int component)orb5x::Diagnosticsstatic
get_entropy_fluct_avg(int isp, int idiag)orb5x::Diagnosticsstatic
get_flux0d_f0(int isp, int idiag)orb5x::Diagnosticsstatic
get_flux0d_w(int isp, int idiag)orb5x::Diagnosticsstatic
get_generic_signoise_avg()orb5x::Diagnosticsstatic
get_generic_signoise_size()orb5x::Diagnosticsstatic
get_generic_spectrum2d_avg(int idiag, int i, int j)orb5x::Diagnosticsstatic
get_ibuf()orb5x::Diagnosticsinlinestatic
get_inner_edge_losses(int isp, int component)orb5x::Diagnosticsstatic
get_irloc_in()orb5x::Diagnosticsstatic
get_jdote_bg(int isp, int idiag)orb5x::Diagnosticsstatic
get_jdote_fluct(int isp, int idiag)orb5x::Diagnosticsstatic
get_misc_avg(int isp, int idiag)orb5x::Diagnosticsstatic
get_noise_2d_all()orb5x::Diagnosticsstatic
get_nsbound_in(int isp)orb5x::Diagnosticsstatic
get_nsbound_out(int isp)orb5x::Diagnosticsstatic
get_outer_edge_losses(int isp, int component)orb5x::Diagnosticsstatic
get_signal_2d_all()orb5x::Diagnosticsstatic
get_spectrum2d_avg(int isp, int idiag, int i, int j)orb5x::Diagnosticsstatic
get_tot_cg_bins(int isp)orb5x::Diagnosticsstatic
get_tot_cg_markers(int isp)orb5x::Diagnosticsstatic
get_trap_frac(int isp, int type)orb5x::Diagnosticsstatic
get_variance(int isp, int index)orb5x::Diagnosticsstatic
get_vexbnavg(int isp, int idiag)orb5x::Diagnosticsstatic
get_vthmax2_cached(int isp)orb5x::Diagnosticsstatic
get_vthmax_cached(int isp)orb5x::Diagnosticsstatic
get_wsqreduced(int isp)orb5x::Diagnosticsstatic
getpot_fieldnum(Real s, Real theta, Real phi, int fieldnum)orb5x::Diagnosticsstatic
init_generic_signoise()orb5x::Diagnosticsstatic
init_phase1_diagnostics()orb5x::Diagnosticsstatic
init_test_diagnostic_arrays(int nspecies)orb5x::Diagnosticsinlinestatic
init_variance(int nspecies)orb5x::Diagnosticsinlinestatic
initialize_diagnostics()orb5x::Diagnosticsstatic
initialize_phasespace_diags()orb5x::Diagnosticsstatic
initialize_source_3d_diags()orb5x::Diagnosticsstatic
jdote(int isp, Real ut2, Real vpt2, const std::vector< Real > &vpar, const std::vector< Real > &genelec, const std::vector< Real > &elec_par, Real wt, Real bstar_inv, const std::vector< Real > &bgrb, const std::vector< Real > &vgb, const std::vector< Real > &vpressure, const std::vector< Real > &veb_f, const std::vector< Real > &vexb, Real expt_back, Real eypt_back, Real dvpadt0, Real gyroapar)orb5x::Diagnosticsstatic
jdote_bg_ref()orb5x::Diagnosticsstatic
jdote_fluct_ref()orb5x::Diagnosticsstatic
max_of_0d(int isp, int i, Real to_add)orb5x::Diagnosticsstatic
max_of_0d_vexbnmax(int isp, Real to_add)orb5x::Diagnosticsstatic
max_of_0d_vmax(int isp, Real to_add)orb5x::Diagnosticsstatic
max_of_0d_wmax(int isp, Real to_add)orb5x::Diagnosticsstatic
misc_avg_ref()orb5x::Diagnosticsstatic
mmin_f_serialize()orb5x::Diagnosticsstatic
moment1d_f0_ref()orb5x::Diagnosticsstatic
moment1d_f_ref()orb5x::Diagnosticsstatic
moment1d_worb5x::Diagnosticsinlinestatic
moment1d_w_ref()orb5x::Diagnosticsstatic
moment2d_avg_ref()orb5x::Diagnosticsstatic
mpr_2d_ref()orb5x::Diagnosticsstatic
mpr_es_calc(int isp, int iuloc, int imuloc, Real sigmat, Real thetat, Real wt, Real ut2, Real vpt2, Real bstar_inv, const std::vector< Real > &vpar, const std::vector< Real > &genelec, const std::vector< Real > &bgrb, const std::vector< Real > &vgb, const std::vector< Real > &vpressure, const std::vector< Real > &veb_f)orb5x::Diagnosticsstatic
nl_do_diag(int step_tot, int nfreq)orb5x::Diagnosticsstatic
normalize_flux1d(int isp)orb5x::Diagnosticsstatic
normalize_moment1d_f(int isp)orb5x::Diagnosticsstatic
normalize_moment1d_f0(int isp)orb5x::Diagnosticsstatic
normalize_moment1d_w(int isp)orb5x::Diagnosticsstatic
normalize_moment2d(int isp)orb5x::Diagnosticsstatic
normalize_poloidal1d(int isp)orb5x::Diagnosticsstatic
omp_reduce_diag(T &data, bool use_max=false)orb5x::Diagnosticsstatic
omp_reduce_diag0d(Real &data, bool use_max=false)orb5x::Diagnosticsstatic
omp_reduce_diag1d(std::vector< Real > &data, bool use_max=false)orb5x::Diagnosticsstatic
omp_reduce_diag2d(std::vector< std::vector< Real > > &data, bool use_max=false)orb5x::Diagnosticsstatic
omp_reduce_diag3d(std::vector< std::vector< std::vector< Real > > > &data, bool use_max=false)orb5x::Diagnosticsstatic
outorb5x::Diagnosticsinlinestatic
pe_phi_cutsorb5x::Diagnosticsinlinestatic
phasespace_3d_ref()orb5x::Diagnosticsstatic
phi00orb5x::Diagnosticsinlinestatic
phi0_chiorb5x::Diagnosticsinlinestatic
phibarorb5x::Diagnosticsinlinestatic
philocorb5x::Diagnosticsinlinestatic
philoc_hfsorb5x::Diagnosticsinlinestatic
polarisation_fieldcalc(int isp)orb5x::Diagnosticsstatic
poloidal1d_f_ref()orb5x::Diagnosticsstatic
poloidal1d_w_ref()orb5x::Diagnosticsstatic
profsphi(Real theta, int fieldnum, std::vector< std::vector< Real > > &pot_sp)orb5x::Diagnosticsstatic
profsth(Real phi, int fieldnum, int ns0, std::vector< std::vector< Real > > &pot_st, std::vector< std::vector< Real > > *xc=nullptr, std::vector< std::vector< Real > > *zc=nullptr)orb5x::Diagnosticsstatic
put3d_dens(Real time, bool do_moments=false)orb5x::Diagnosticsstatic
put3d_h5s(Real time, int diag_select, int field_select, int isp=-1)orb5x::Diagnosticsstatic
putarr(const std::string &path, const Real *array, size_t length, const std::string &title="")orb5x::Diagnosticsstatic
putarr_attime_1d(const std::string &path, const Real *array, size_t length, Real time)orb5x::Diagnosticsstatic
putarr_attime_2d(const std::string &path, const Real *array, size_t dim1, size_t dim2, Real time)orb5x::Diagnosticsstatic
read_restart_state(int datn)orb5x::Diagnosticsstatic
rho00orb5x::Diagnosticsinlinestatic
rhs_f_serialize(const std::vector< std::vector< std::complex< Real > > > &rhs_f_ptr)orb5x::Diagnosticsstatic
sampling_2d_ref()orb5x::Diagnosticsstatic
set_buf(Kokkos::View< Real ** > v)orb5x::Diagnosticsinlinestatic
set_buf_pic(Kokkos::View< Real *** > v)orb5x::Diagnosticsinlinestatic
set_dSdt_heat(int isp, Real value)orb5x::Diagnosticsstatic
set_dSdt_nc(int isp, Real value)orb5x::Diagnosticsstatic
set_dSdt_nc_corr(int isp, Real value)orb5x::Diagnosticsstatic
set_efield(int isp, int component, Real value)orb5x::Diagnosticsstatic
set_efield_av(int isp, int component, Real value)orb5x::Diagnosticsstatic
set_efield_fft(int isp, int component, Real value)orb5x::Diagnosticsstatic
set_generic_spectrum2d_avg(int idiag, int i, int j, Real value)orb5x::Diagnosticsstatic
set_ibuf(int val)orb5x::Diagnosticsinlinestatic
set_inner_edge_losses(int isp, int component, Real value)orb5x::Diagnosticsstatic
set_misc_avg(int isp, int idx, Real val)orb5x::Diagnosticsinlinestatic
set_nsbound_in(int isp, int value)orb5x::Diagnosticsstatic
set_nsbound_out(int isp, int value)orb5x::Diagnosticsstatic
set_outer_edge_losses(int isp, int component, Real value)orb5x::Diagnosticsstatic
set_signal2noise(Real sn, Real sn_nozf)orb5x::Diagnosticsstatic
set_signal2noise_em(Real sn, Real sn_nozf)orb5x::Diagnosticsstatic
set_spectrum2d_avg(int isp, int idiag, int i, int j, Real value)orb5x::Diagnosticsstatic
set_variance(int isp, int index, Real value)orb5x::Diagnosticsstatic
snapshot_variance(int isp)orb5x::Diagnosticsstatic
source_diag1d_avg_ref()orb5x::Diagnosticsstatic
strong_diagnostic_output(int isp, int ip, Real psi0t, Real temp2, Real ze, Real vecrossb_f2, Real pot_equil, Real zf0, Real zvth2_inv, Real dpotdpsi, Real vdr, Real rhs)orb5x::Diagnosticsstatic
sum_entropy_fluctuation(int isp, Real wt, Real zf0, Real q_vgc_dot_genelec, Real zvth2_inv, Real df0_dpsi_prof, Real df0_dchi_prof, Real dpsi_prof_dt)orb5x::Diagnosticsstatic
sum_fluid_moments(int isp, Real sigmat, Real chit, Real phit, Real wt, Real ut, Real ut2, Real vpt2)orb5x::Diagnosticsstatic
sum_in_radial_bins_island(int isp, int irloc, int ipol, Real ut, const std::vector< Real > &gradpsi0, Real htildex, Real htildey, Real ze, Real zf0, Real wt, Real dPsidt1, Real ffinit_tmp1, Real ffinit_tmp2, Real ffinit_tmp3, Real ffinit_tmp4)orb5x::Diagnosticsstatic
sum_moment2d(int isp, int irloc, int ithetaloc, Real wt, Real ffinit_tmp1, Real ffinit_tmp2, Real ffinit_tmp3, Real ffinit_tmp4)orb5x::Diagnosticsstatic
sum_particles_in_poloidal_bins(int isp, int ithetaloc, Real wt, Real ffinit_tmp1, Real ffinit_tmp2, Real ffinit_tmp3, Real ffinit_tmp4, Real wt_tmp1, Real wt_tmp2, Real wt_tmp3)orb5x::Diagnosticsstatic
sum_particles_in_radial_bins(int isp, int ip, int irloc, Real zf0, Real dPsidt1, Real dPsidt0, Real ze, Real wt, Real ut, Real ut2, Real vpt2, Real rt2, const std::vector< Real > &vpar, Real zf0_tmp1, Real zf0_tmp2, Real zf0_tmp3, Real sigmat, Real zf0_local, Real grsigma2, Real grsigmagrchi, Real b, const std::vector< Real > &exh, Real wt_tmp1, Real wt_tmp2, Real wt_tmp3, const std::vector< Real > &vexb, Real ffinit_tmp1, Real ffinit_tmp2, Real ffinit_tmp3, Real ffinit_tmp4, Real ffinit_tmp5, Real jdote_tot, const std::vector< Real > &eloc)orb5x::Diagnosticsstatic
sum_spectrum2d_avg(int isp, int idiag, int ndim, int mdim)orb5x::Diagnosticsstatic
sum_velocities(int isp, int iuloc, int imuloc, Real wt, Real zf0, Real pvol)orb5x::Diagnosticsstatic
test_particle_output(int isp, int ip, Real psi0t, Real ze, Real pot_equil, Real wt, Real zvth2, Real nval, Real pvol_updated, Real zf0)orb5x::Diagnosticsstatic
vel1d_avg_ref()orb5x::Diagnosticsstatic
vel2d_avg_ref()orb5x::Diagnosticsstatic
velocity_space_diag_init()orb5x::Diagnosticsstatic
vmax_ref()orb5x::Diagnosticsstatic
wmax_ref()orb5x::Diagnosticsstatic
write_output(int step, Real time)orb5x::Diagnosticsstatic
write_restart_state(int datn)orb5x::Diagnosticsstatic
zero_generic_spectrum2d_avg(int idiag, int ndim, int mdim)orb5x::Diagnosticsstatic
zero_spectrum2d_avg(int isp, int idiag, int ndim, int mdim)orb5x::Diagnosticsstatic