#include "diagnostics.hpp"

Collaboration diagram for orb5x::Diagnostics:

Classes
struct	PlaceholderEntry

Public Member Functions
	Diagnostics ()

Static Public Member Functions
static void	accumulate_diagnostics (int isp, Real wt, Real w3t, Real pt, Real pvolgc, Real ze, Real zf0, Real sigmat, Real q_vgc_dot_genelec, Real q_dvpadt0_dot_gyroapar)

static void	accumulate_displacements (int isp, bool in_ksieta, Real chit_cos, Real chit_sin, Real sigmat, const std::array< Real, 3 > &tempd, const std::array< Real, 3 > &vgc, const std::array< Real, 3 > &vexb, Real dvpadt1, Real dvpadt0, Real rhs, bool nl_directdf)

static void	accumulate_flux1d_f0 (int isp, int irloc, Real zf0, Real dPsidt1, Real dPsidt0, Real ze, Real ut, Real rt2, const std::vector< Real > &vpar)

static void	accumulate_flux1d_w (int isp, int irloc, Real wt, Real dPsidt1, Real dPsidt0, Real ze, Real ut, Real rt2, const std::vector< Real > &vpar)

static void	accumulate_moment1d_f (int isp, int irloc, Real zf0, Real wt, Real ut, Real ut2, Real vpt2)

static void	accumulate_moment1d_f0 (int isp, int irloc, Real zf0, Real ut, Real ut2, Real vpt2, Real rt2, const std::vector< Real > &vpar, const std::vector< Real > &vexb, Real b)

static void	accumulate_moment1d_w (int isp, int irloc, Real zf0, Real wt, Real ut, Real ut2, Real vpt2, Real rt2, const std::vector< Real > &vpar, const std::vector< Real > &vexb, Real b, Real jdote_tot)

static void	add_efield (int isp, int component, Real value)

static void	add_efield_av (int isp, int component, Real value)

static void	add_to_0d_vexbnavg (int isp, Real to_add)

static void	add_to_entropy_fluct (int isp, int idiag, Real value)

static void	add_to_jdote_bg (int isp, int idiag, Real value)

static void	add_to_jdote_fluct (int isp, int idiag, Real value)

static void	add_trap_frac (int isp, int type, Real value)

static void	append_placeholder_slices (int step, Real time)

static void	append_scalar (const std::string &path, const Real *values, size_t count)

static void	append_stat_int (const std::string &path, const int *array, size_t count)

static void	clear_diagnostics (int isp)

static void	clear_entropy_diag (int isp)

static void	clear_jdote (int isp)

static void	clear_jdote_fluct (int isp)

static void	createg_1D (const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name)

static void	createg_1Dms (const std::string &species_name, const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name)

static void	createg_2D (const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name)

static void	createg_2Dms (const std::string &species_name, const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name)

static void	createg_3D (const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name, const std::vector< Real > &coord3, const std::string &coord3_name)

static void	createg_3Dms (const std::string &species_name, const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name, const std::vector< Real > &coord3, const std::string &coord3_name, const std::vector< std::vector< int > > *mmin_f=nullptr)

static void	createg_3Dz (const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name, const std::vector< Real > &coord3, const std::string &coord3_name, const std::vector< std::vector< int > > *mmin_f=nullptr)

static void	createg_3Dzms (const std::string &species_name, const std::string &name, const std::string &description, const std::vector< Real > &coord1, const std::string &coord1_name, const std::vector< Real > &coord2, const std::string &coord2_name, const std::vector< Real > &coord3, const std::string &coord3_name, const std::vector< std::vector< int > > *mmin_f=nullptr)

static void	destroyStaticViews ()

static void	diag3d_on_fluid_moments (int isp)

static void	diag3d_spectrum (const std::vector< std::vector< std::vector< Real > > > &field, std::vector< std::vector< Real > > &spectrum_out, int nmax)

static void	diag_fields_torpol (int fieldnum, Real time)

static void	diag_fields_torpol_init ()

static void	diag_fulltorus (int fieldnum, Real time)

static void	diag_fulltorus_init ()

static void	diagnose (int step, int step_tot, Real time)

static void	diagnose_phasespace (int isp, Real s, Real vpar, Real mu, Real B, Real pvol, Real w, Real zf0)

static void	diagnose_sampling (int isp, Real s, Real en, Real pvol, Real w, Real zf0)

static void	diagnostics_after_loop (int isp)

static std::vector< std::vector< Real > > &	displacement_avg_ref ()

static std::vector< std::vector< Real > > &	displacement_exb_avg_ref ()

static std::vector< std::vector< Real > > &	displacement_exb_max_ref ()

static std::vector< std::vector< Real > > &	displacement_max_ref ()

static void	electron_fluxes_moments (int isp, int irloc, Real zf0, Real dPsidt1, Real dPsidt0, Real ze, Real wt, Real ffinit_tmp1, Real ffinit_tmp2, Real ffinit_tmp3, Real ffinit_tmp4, bool is_trapped)

static std::vector< std::vector< Real > > &	entropy_fluct_avg_ref ()

static std::vector< std::vector< std::vector< std::vector< std::vector< Real > > > > > &	fluid_moments_ref ()

static void	flush0d ()

static std::vector< std::vector< std::vector< Real > > > &	flux1d_f0_ref ()

static std::vector< std::vector< std::vector< Real > > > &	flux1d_w_ref ()

static Real	get_adiab (int isp)

static Kokkos::View< Real ** > &	get_buf ()

static Kokkos::View< Real *** > &	get_buf_pic ()

static int	get_cum_non_cg_bins (int isp)

static int	get_cum_non_cg_markers (int isp)

static Real	get_dSdt_heat (int isp)

static Real	get_dSdt_nc (int isp)

static Real	get_dSdt_nc_corr (int isp)

static Real	get_efield (int isp, int component)

static Real	get_efield_av (int isp, int component)

static Real	get_efield_fft (int isp, int component)

static Real	get_entropy_fluct_avg (int isp, int idiag)

static Real	get_flux0d_f0 (int isp, int idiag)

static Real	get_flux0d_w (int isp, int idiag)

static Kokkos::View< Real * >	get_generic_signoise_avg ()

static int	get_generic_signoise_size ()

static Real	get_generic_spectrum2d_avg (int idiag, int i, int j)

static int	get_ibuf ()

static Real	get_inner_edge_losses (int isp, int component)

static int	get_irloc_in ()

static Real	get_jdote_bg (int isp, int idiag)

static Real	get_jdote_fluct (int isp, int idiag)

static Real	get_misc_avg (int isp, int idiag)

static Kokkos::View< Real ** > &	get_noise_2d_all ()

static int	get_nsbound_in (int isp)

static int	get_nsbound_out (int isp)

static Real	get_outer_edge_losses (int isp, int component)

static Kokkos::View< Real ** > &	get_signal_2d_all ()

static Real	get_spectrum2d_avg (int isp, int idiag, int i, int j)

static int	get_tot_cg_bins (int isp)

static int	get_tot_cg_markers (int isp)

static Real	get_trap_frac (int isp, int type)

static Real	get_variance (int isp, int index)

static Real	get_vexbnavg (int isp, int idiag)

static Real	get_vthmax2_cached (int isp)

static Real	get_vthmax_cached (int isp)

static Real	get_wsqreduced (int isp)

static Real	getpot_fieldnum (Real s, Real theta, Real phi, int fieldnum)

static void	init_generic_signoise ()

static void	init_phase1_diagnostics ()

static void	init_test_diagnostic_arrays (int nspecies)
	Initialize all diagnostic arrays needed by diagnose() for testing.

static void	init_variance (int nspecies)

static void	initialize_diagnostics ()

static void	initialize_phasespace_diags ()

static void	initialize_source_3d_diags ()

static Real	jdote (int isp, Real ut2, Real vpt2, const std::vector< Real > &vpar, const std::vector< Real > &genelec, const std::vector< Real > &elec_par, Real wt, Real bstar_inv, const std::vector< Real > &bgrb, const std::vector< Real > &vgb, const std::vector< Real > &vpressure, const std::vector< Real > &veb_f, const std::vector< Real > &vexb, Real expt_back, Real eypt_back, Real dvpadt0, Real gyroapar)

static std::vector< std::vector< Real > > &	jdote_bg_ref ()

static std::vector< std::vector< Real > > &	jdote_fluct_ref ()

static void	max_of_0d (int isp, int i, Real to_add)

static void	max_of_0d_vexbnmax (int isp, Real to_add)

static void	max_of_0d_vmax (int isp, Real to_add)

static void	max_of_0d_wmax (int isp, Real to_add)

static std::vector< std::vector< Real > > &	misc_avg_ref ()

static void	mmin_f_serialize ()

static std::vector< std::vector< std::vector< Real > > > &	moment1d_f0_ref ()

static std::vector< std::vector< std::vector< Real > > > &	moment1d_f_ref ()

static std::vector< std::vector< std::vector< Real > > > &	moment1d_w_ref ()

static std::vector< std::vector< std::vector< std::vector< Real > > > > &	moment2d_avg_ref ()

static std::vector< std::vector< std::vector< std::vector< Real > > > > &	mpr_2d_ref ()

static void	mpr_es_calc (int isp, int iuloc, int imuloc, Real sigmat, Real thetat, Real wt, Real ut2, Real vpt2, Real bstar_inv, const std::vector< Real > &vpar, const std::vector< Real > &genelec, const std::vector< Real > &bgrb, const std::vector< Real > &vgb, const std::vector< Real > &vpressure, const std::vector< Real > &veb_f)

static bool	nl_do_diag (int step_tot, int nfreq)

static void	normalize_flux1d (int isp)

static void	normalize_moment1d_f (int isp)

static void	normalize_moment1d_f0 (int isp)

static void	normalize_moment1d_w (int isp)

static void	normalize_moment2d (int isp)

static void	normalize_poloidal1d (int isp)

template<typename T >
static void	omp_reduce_diag (T &data, bool use_max=false)
	Generic diagnostic reduction interface (matches Fortran omp_reduce_diag)

static void	omp_reduce_diag0d (Real &data, bool use_max=false)
	Reduce 0D diagnostic array (single value per species)

static void	omp_reduce_diag1d (std::vector< Real > &data, bool use_max=false)
	Reduce 1D diagnostic array.

static void	omp_reduce_diag2d (std::vector< std::vector< Real > > &data, bool use_max=false)
	Reduce 2D diagnostic array.

static void	omp_reduce_diag3d (std::vector< std::vector< std::vector< Real > > > &data, bool use_max=false)
	Reduce 3D diagnostic array.

static std::vector< std::vector< std::vector< std::vector< std::vector< Real > > > > > &	phasespace_3d_ref ()

static void	polarisation_fieldcalc (int isp)

static std::vector< std::vector< std::vector< Real > > > &	poloidal1d_f_ref ()

static std::vector< std::vector< std::vector< Real > > > &	poloidal1d_w_ref ()

static void	profsphi (Real theta, int fieldnum, std::vector< std::vector< Real > > &pot_sp)

static void	profsth (Real phi, int fieldnum, int ns0, std::vector< std::vector< Real > > &pot_st, std::vector< std::vector< Real > > xc=nullptr, std::vector< std::vector< Real > > zc=nullptr)

static void	put3d_dens (Real time, bool do_moments=false)

static void	put3d_h5s (Real time, int diag_select, int field_select, int isp=-1)

static void	putarr (const std::string &path, const Real *array, size_t length, const std::string &title="")

static void	putarr_attime_1d (const std::string &path, const Real *array, size_t length, Real time)

static void	putarr_attime_2d (const std::string &path, const Real *array, size_t dim1, size_t dim2, Real time)

static void	read_restart_state (int datn)

static void	rhs_f_serialize (const std::vector< std::vector< std::complex< Real > > > &rhs_f_ptr)

static std::vector< std::vector< std::vector< std::vector< Real > > > > &	sampling_2d_ref ()

static void	set_buf (Kokkos::View< Real ** > v)

static void	set_buf_pic (Kokkos::View< Real *** > v)

static void	set_dSdt_heat (int isp, Real value)

static void	set_dSdt_nc (int isp, Real value)

static void	set_dSdt_nc_corr (int isp, Real value)

static void	set_efield (int isp, int component, Real value)

static void	set_efield_av (int isp, int component, Real value)

static void	set_efield_fft (int isp, int component, Real value)

static void	set_generic_spectrum2d_avg (int idiag, int i, int j, Real value)

static void	set_ibuf (int val)

static void	set_inner_edge_losses (int isp, int component, Real value)

static void	set_misc_avg (int isp, int idx, Real val)

static void	set_nsbound_in (int isp, int value)

static void	set_nsbound_out (int isp, int value)

static void	set_outer_edge_losses (int isp, int component, Real value)

static void	set_signal2noise (Real sn, Real sn_nozf)

static void	set_signal2noise_em (Real sn, Real sn_nozf)

static void	set_spectrum2d_avg (int isp, int idiag, int i, int j, Real value)

static void	set_variance (int isp, int index, Real value)

static void	snapshot_variance (int isp)

static std::vector< std::vector< std::vector< Real > > > &	source_diag1d_avg_ref ()

static void	strong_diagnostic_output (int isp, int ip, Real psi0t, Real temp2, Real ze, Real vecrossb_f2, Real pot_equil, Real zf0, Real zvth2_inv, Real dpotdpsi, Real vdr, Real rhs)

static void	sum_entropy_fluctuation (int isp, Real wt, Real zf0, Real q_vgc_dot_genelec, Real zvth2_inv, Real df0_dpsi_prof, Real df0_dchi_prof, Real dpsi_prof_dt)

static void	sum_fluid_moments (int isp, Real sigmat, Real chit, Real phit, Real wt, Real ut, Real ut2, Real vpt2)

static void	sum_in_radial_bins_island (int isp, int irloc, int ipol, Real ut, const std::vector< Real > &gradpsi0, Real htildex, Real htildey, Real ze, Real zf0, Real wt, Real dPsidt1, Real ffinit_tmp1, Real ffinit_tmp2, Real ffinit_tmp3, Real ffinit_tmp4)

static void	sum_moment2d (int isp, int irloc, int ithetaloc, Real wt, Real ffinit_tmp1, Real ffinit_tmp2, Real ffinit_tmp3, Real ffinit_tmp4)

static void	sum_particles_in_poloidal_bins (int isp, int ithetaloc, Real wt, Real ffinit_tmp1, Real ffinit_tmp2, Real ffinit_tmp3, Real ffinit_tmp4, Real wt_tmp1, Real wt_tmp2, Real wt_tmp3)

static void	sum_particles_in_radial_bins (int isp, int ip, int irloc, Real zf0, Real dPsidt1, Real dPsidt0, Real ze, Real wt, Real ut, Real ut2, Real vpt2, Real rt2, const std::vector< Real > &vpar, Real zf0_tmp1, Real zf0_tmp2, Real zf0_tmp3, Real sigmat, Real zf0_local, Real grsigma2, Real grsigmagrchi, Real b, const std::vector< Real > &exh, Real wt_tmp1, Real wt_tmp2, Real wt_tmp3, const std::vector< Real > &vexb, Real ffinit_tmp1, Real ffinit_tmp2, Real ffinit_tmp3, Real ffinit_tmp4, Real ffinit_tmp5, Real jdote_tot, const std::vector< Real > &eloc)

static Real	sum_spectrum2d_avg (int isp, int idiag, int ndim, int mdim)

static void	sum_velocities (int isp, int iuloc, int imuloc, Real wt, Real zf0, Real pvol)

static void	test_particle_output (int isp, int ip, Real psi0t, Real ze, Real pot_equil, Real wt, Real zvth2, Real nval, Real pvol_updated, Real zf0)

static std::vector< std::vector< std::vector< Real > > > &	vel1d_avg_ref ()

static std::vector< std::vector< std::vector< std::vector< Real > > > > &	vel2d_avg_ref ()

static void	velocity_space_diag_init ()

static std::vector< Real > &	vmax_ref ()

static std::vector< Real > &	wmax_ref ()

static void	write_output (int step, Real time)

static void	write_restart_state (int datn)

static void	zero_generic_spectrum2d_avg (int idiag, int ndim, int mdim)

static void	zero_spectrum2d_avg (int isp, int idiag, int ndim, int mdim)

Static Public Attributes
static std::vector< Real >	apaloc

static constexpr int	FIELD_APAR = 2

static constexpr int	FIELD_APAR_HAM = 3

static constexpr int	FIELD_APAR_SYMPL = 4

static constexpr int	FIELD_DENS = 5

static constexpr int	FIELD_PHI = 1

static constexpr int	FIELD_USER = 6

static std::vector< std::vector< std::vector< Real > > >	moment1d_w

static std::vector< bool >	out

static std::array< int, 3 >	pe_phi_cuts = {0, 0, 0}

static std::vector< Real >	phi00

static std::vector< Real >	phi0_chi

static std::vector< Real >	phibar

static std::vector< Real >	philoc

static std::vector< Real >	philoc_hfs

static std::vector< std::vector< Real > >	rho00

Constructor & Destructor Documentation

◆ Diagnostics()

orb5x::Diagnostics::Diagnostics ( )

inline

References pe_phi_cuts.

Member Function Documentation

◆ accumulate_diagnostics()

static void orb5x::Diagnostics::accumulate_diagnostics	(	int	isp,
		Real	wt,
		Real	w3t,
		Real	pt,
		Real	pvolgc,
		Real	ze,
		Real	zf0,
		Real	sigmat,
		Real	q_vgc_dot_genelec,
		Real	q_dvpadt0_dot_gyroapar
	)

static

◆ accumulate_displacements()

static void orb5x::Diagnostics::accumulate_displacements	(	int	isp,
		bool	in_ksieta,
		Real	chit_cos,
		Real	chit_sin,
		Real	sigmat,
		const std::array< Real, 3 > &	tempd,
		const std::array< Real, 3 > &	vgc,
		const std::array< Real, 3 > &	vexb,
		Real	dvpadt1,
		Real	dvpadt0,
		Real	rhs,
		bool	nl_directdf
	)

static

◆ accumulate_flux1d_f0()

static void orb5x::Diagnostics::accumulate_flux1d_f0	(	int	isp,
		int	irloc,
		Real	zf0,
		Real	dPsidt1,
		Real	dPsidt0,
		Real	ze,
		Real	ut,
		Real	rt2,
		const std::vector< Real > &	vpar
	)

static

◆ accumulate_flux1d_w()

static void orb5x::Diagnostics::accumulate_flux1d_w	(	int	isp,
		int	irloc,
		Real	wt,
		Real	dPsidt1,
		Real	dPsidt0,
		Real	ze,
		Real	ut,
		Real	rt2,
		const std::vector< Real > &	vpar
	)

static

◆ accumulate_moment1d_f()

static void orb5x::Diagnostics::accumulate_moment1d_f	(	int	isp,
		int	irloc,
		Real	zf0,
		Real	wt,
		Real	ut,
		Real	ut2,
		Real	vpt2
	)

static

◆ accumulate_moment1d_f0()

static void orb5x::Diagnostics::accumulate_moment1d_f0	(	int	isp,
		int	irloc,
		Real	zf0,
		Real	ut,
		Real	ut2,
		Real	vpt2,
		Real	rt2,
		const std::vector< Real > &	vpar,
		const std::vector< Real > &	vexb,
		Real	b
	)

static

◆ accumulate_moment1d_w()

static void orb5x::Diagnostics::accumulate_moment1d_w	(	int	isp,
		int	irloc,
		Real	zf0,
		Real	wt,
		Real	ut,
		Real	ut2,
		Real	vpt2,
		Real	rt2,
		const std::vector< Real > &	vpar,
		const std::vector< Real > &	vexb,
		Real	b,
		Real	jdote_tot
	)

static

◆ add_efield()

static void orb5x::Diagnostics::add_efield	(	int	isp,
		int	component,
		Real	value
	)

static

◆ add_efield_av()

static void orb5x::Diagnostics::add_efield_av	(	int	isp,
		int	component,
		Real	value
	)

static

◆ add_to_0d_vexbnavg()

static void orb5x::Diagnostics::add_to_0d_vexbnavg	(	int	isp,
		Real	to_add
	)

static

◆ add_to_entropy_fluct()

static void orb5x::Diagnostics::add_to_entropy_fluct	(	int	isp,
		int	idiag,
		Real	value
	)

static

◆ add_to_jdote_bg()

static void orb5x::Diagnostics::add_to_jdote_bg	(	int	isp,
		int	idiag,
		Real	value
	)

static

◆ add_to_jdote_fluct()

static void orb5x::Diagnostics::add_to_jdote_fluct	(	int	isp,
		int	idiag,
		Real	value
	)

static

◆ add_trap_frac()

static void orb5x::Diagnostics::add_trap_frac	(	int	isp,
		int	type,
		Real	value
	)

static

◆ append_placeholder_slices()

static void orb5x::Diagnostics::append_placeholder_slices	(	int	step,
		Real	time
	)

static

◆ append_scalar()

static void orb5x::Diagnostics::append_scalar	(	const std::string &	path,
		const Real *	values,
		size_t	count
	)

static

◆ append_stat_int()

static void orb5x::Diagnostics::append_stat_int	(	const std::string &	path,
		const int *	array,
		size_t	count
	)

static

◆ clear_diagnostics()

static void orb5x::Diagnostics::clear_diagnostics ( int isp )

static

◆ clear_entropy_diag()

static void orb5x::Diagnostics::clear_entropy_diag ( int isp )

static

◆ clear_jdote()

static void orb5x::Diagnostics::clear_jdote ( int isp )

static

◆ clear_jdote_fluct()

static void orb5x::Diagnostics::clear_jdote_fluct ( int isp )

static

◆ createg_1D()

static void orb5x::Diagnostics::createg_1D	(	const std::string &	name,
		const std::string &	description,
		const std::vector< Real > &	coord1,
		const std::string &	coord1_name
	)

static

◆ createg_1Dms()

static void orb5x::Diagnostics::createg_1Dms	(	const std::string &	species_name,
		const std::string &	name,
		const std::string &	description,
		const std::vector< Real > &	coord1,
		const std::string &	coord1_name
	)

static

◆ createg_2D()

static void orb5x::Diagnostics::createg_2D	(	const std::string &	name,
		const std::string &	description,
		const std::vector< Real > &	coord1,
		const std::string &	coord1_name,
		const std::vector< Real > &	coord2,
		const std::string &	coord2_name
	)

static

◆ createg_2Dms()

static void orb5x::Diagnostics::createg_2Dms	(	const std::string &	species_name,
		const std::string &	name,
		const std::string &	description,
		const std::vector< Real > &	coord1,
		const std::string &	coord1_name,
		const std::vector< Real > &	coord2,
		const std::string &	coord2_name
	)

static

◆ createg_3D()

static void orb5x::Diagnostics::createg_3D	(	const std::string &	name,
		const std::string &	description,
		const std::vector< Real > &	coord1,
		const std::string &	coord1_name,
		const std::vector< Real > &	coord2,
		const std::string &	coord2_name,
		const std::vector< Real > &	coord3,
		const std::string &	coord3_name
	)

static

◆ createg_3Dms()

static void orb5x::Diagnostics::createg_3Dms	(	const std::string &	species_name,
		const std::string &	name,
		const std::string &	description,
		const std::vector< Real > &	coord1,
		const std::string &	coord1_name,
		const std::vector< Real > &	coord2,
		const std::string &	coord2_name,
		const std::vector< Real > &	coord3,
		const std::string &	coord3_name,
		const std::vector< std::vector< int > > *	mmin_f = `nullptr`
	)

static

◆ createg_3Dz()

static void orb5x::Diagnostics::createg_3Dz	(	const std::string &	name,
		const std::string &	description,
		const std::vector< Real > &	coord1,
		const std::string &	coord1_name,
		const std::vector< Real > &	coord2,
		const std::string &	coord2_name,
		const std::vector< Real > &	coord3,
		const std::string &	coord3_name,
		const std::vector< std::vector< int > > *	mmin_f = `nullptr`
	)

static

◆ createg_3Dzms()

static void orb5x::Diagnostics::createg_3Dzms	(	const std::string &	species_name,
		const std::string &	name,
		const std::string &	description,
		const std::vector< Real > &	coord1,
		const std::string &	coord1_name,
		const std::vector< Real > &	coord2,
		const std::string &	coord2_name,
		const std::vector< Real > &	coord3,
		const std::string &	coord3_name,
		const std::vector< std::vector< int > > *	mmin_f = `nullptr`
	)

static

◆ destroyStaticViews()

static void orb5x::Diagnostics::destroyStaticViews ( )

static

◆ diag3d_on_fluid_moments()

static void orb5x::Diagnostics::diag3d_on_fluid_moments ( int isp )

static

◆ diag3d_spectrum()

static void orb5x::Diagnostics::diag3d_spectrum	(	const std::vector< std::vector< std::vector< Real > > > &	field,
		std::vector< std::vector< Real > > &	spectrum_out,
		int	nmax
	)

static

◆ diag_fields_torpol()

static void orb5x::Diagnostics::diag_fields_torpol	(	int	fieldnum,
		Real	time
	)

static

◆ diag_fields_torpol_init()

static void orb5x::Diagnostics::diag_fields_torpol_init ( )

static

◆ diag_fulltorus()

static void orb5x::Diagnostics::diag_fulltorus	(	int	fieldnum,
		Real	time
	)

static

◆ diag_fulltorus_init()

static void orb5x::Diagnostics::diag_fulltorus_init ( )

static

◆ diagnose()

static void orb5x::Diagnostics::diagnose	(	int	step,
		int	step_tot,
		Real	time
	)

static

◆ diagnose_phasespace()

static void orb5x::Diagnostics::diagnose_phasespace	(	int	isp,
		Real	s,
		Real	vpar,
		Real	mu,
		Real	B,
		Real	pvol,
		Real	w,
		Real	zf0
	)

static

◆ diagnose_sampling()

static void orb5x::Diagnostics::diagnose_sampling	(	int	isp,
		Real	s,
		Real	en,
		Real	pvol,
		Real	w,
		Real	zf0
	)

static

◆ diagnostics_after_loop()

static void orb5x::Diagnostics::diagnostics_after_loop ( int isp )

static

◆ displacement_avg_ref()

static std::vector< std::vector< Real > > & orb5x::Diagnostics::displacement_avg_ref ( )

static

◆ displacement_exb_avg_ref()

static std::vector< std::vector< Real > > & orb5x::Diagnostics::displacement_exb_avg_ref ( )

static

◆ displacement_exb_max_ref()

static std::vector< std::vector< Real > > & orb5x::Diagnostics::displacement_exb_max_ref ( )

static

◆ displacement_max_ref()

static std::vector< std::vector< Real > > & orb5x::Diagnostics::displacement_max_ref ( )

static

◆ electron_fluxes_moments()

static void orb5x::Diagnostics::electron_fluxes_moments	(	int	isp,
		int	irloc,
		Real	zf0,
		Real	dPsidt1,
		Real	dPsidt0,
		Real	ze,
		Real	wt,
		Real	ffinit_tmp1,
		Real	ffinit_tmp2,
		Real	ffinit_tmp3,
		Real	ffinit_tmp4,
		bool	is_trapped
	)

static

◆ entropy_fluct_avg_ref()

static std::vector< std::vector< Real > > & orb5x::Diagnostics::entropy_fluct_avg_ref ( )

static

◆ fluid_moments_ref()

static std::vector< std::vector< std::vector< std::vector< std::vector< Real > > > > > & orb5x::Diagnostics::fluid_moments_ref ( )

static

◆ flush0d()

static void orb5x::Diagnostics::flush0d ( )

static

◆ flux1d_f0_ref()

static std::vector< std::vector< std::vector< Real > > > & orb5x::Diagnostics::flux1d_f0_ref ( )

static

◆ flux1d_w_ref()

static std::vector< std::vector< std::vector< Real > > > & orb5x::Diagnostics::flux1d_w_ref ( )

static

◆ get_adiab()

static Real orb5x::Diagnostics::get_adiab ( int isp )

static

◆ get_buf()

static Kokkos::View< Real ** > & orb5x::Diagnostics::get_buf ( )

inlinestatic

◆ get_buf_pic()

static Kokkos::View< Real *** > & orb5x::Diagnostics::get_buf_pic ( )

inlinestatic

◆ get_cum_non_cg_bins()

static int orb5x::Diagnostics::get_cum_non_cg_bins ( int isp )

static

◆ get_cum_non_cg_markers()

static int orb5x::Diagnostics::get_cum_non_cg_markers ( int isp )

static

◆ get_dSdt_heat()

static Real orb5x::Diagnostics::get_dSdt_heat ( int isp )

static

◆ get_dSdt_nc()

static Real orb5x::Diagnostics::get_dSdt_nc ( int isp )

static

◆ get_dSdt_nc_corr()

static Real orb5x::Diagnostics::get_dSdt_nc_corr ( int isp )

static

◆ get_efield()

static Real orb5x::Diagnostics::get_efield	(	int	isp,
		int	component
	)

static

◆ get_efield_av()

static Real orb5x::Diagnostics::get_efield_av	(	int	isp,
		int	component
	)

static

◆ get_efield_fft()

static Real orb5x::Diagnostics::get_efield_fft	(	int	isp,
		int	component
	)

static

◆ get_entropy_fluct_avg()

static Real orb5x::Diagnostics::get_entropy_fluct_avg	(	int	isp,
		int	idiag
	)

static

◆ get_flux0d_f0()

static Real orb5x::Diagnostics::get_flux0d_f0	(	int	isp,
		int	idiag
	)

static

◆ get_flux0d_w()

static Real orb5x::Diagnostics::get_flux0d_w	(	int	isp,
		int	idiag
	)

static

◆ get_generic_signoise_avg()

static Kokkos::View< Real * > orb5x::Diagnostics::get_generic_signoise_avg ( )

static

◆ get_generic_signoise_size()

static int orb5x::Diagnostics::get_generic_signoise_size ( )

static

◆ get_generic_spectrum2d_avg()

static Real orb5x::Diagnostics::get_generic_spectrum2d_avg	(	int	idiag,
		int	i,
		int	j
	)

static

◆ get_ibuf()

static int orb5x::Diagnostics::get_ibuf ( )

inlinestatic

◆ get_inner_edge_losses()

static Real orb5x::Diagnostics::get_inner_edge_losses	(	int	isp,
		int	component
	)

static

◆ get_irloc_in()

static int orb5x::Diagnostics::get_irloc_in ( )

static

◆ get_jdote_bg()

static Real orb5x::Diagnostics::get_jdote_bg	(	int	isp,
		int	idiag
	)

static

◆ get_jdote_fluct()

static Real orb5x::Diagnostics::get_jdote_fluct	(	int	isp,
		int	idiag
	)

static

◆ get_misc_avg()

static Real orb5x::Diagnostics::get_misc_avg	(	int	isp,
		int	idiag
	)

static

◆ get_noise_2d_all()

static Kokkos::View< Real ** > & orb5x::Diagnostics::get_noise_2d_all ( )

static

◆ get_nsbound_in()

static int orb5x::Diagnostics::get_nsbound_in ( int isp )

static

◆ get_nsbound_out()

static int orb5x::Diagnostics::get_nsbound_out ( int isp )

static

◆ get_outer_edge_losses()

static Real orb5x::Diagnostics::get_outer_edge_losses	(	int	isp,
		int	component
	)

static

◆ get_signal_2d_all()

static Kokkos::View< Real ** > & orb5x::Diagnostics::get_signal_2d_all ( )

static

◆ get_spectrum2d_avg()

static Real orb5x::Diagnostics::get_spectrum2d_avg	(	int	isp,
		int	idiag,
		int	i,
		int	j
	)

static

◆ get_tot_cg_bins()

static int orb5x::Diagnostics::get_tot_cg_bins ( int isp )

static

◆ get_tot_cg_markers()

static int orb5x::Diagnostics::get_tot_cg_markers ( int isp )

static

◆ get_trap_frac()

static Real orb5x::Diagnostics::get_trap_frac	(	int	isp,
		int	type
	)

static

◆ get_variance()

static Real orb5x::Diagnostics::get_variance	(	int	isp,
		int	index
	)

static

◆ get_vexbnavg()

static Real orb5x::Diagnostics::get_vexbnavg	(	int	isp,
		int	idiag
	)

static

◆ get_vthmax2_cached()

static Real orb5x::Diagnostics::get_vthmax2_cached ( int isp )

static

◆ get_vthmax_cached()

static Real orb5x::Diagnostics::get_vthmax_cached ( int isp )

static

◆ get_wsqreduced()

static Real orb5x::Diagnostics::get_wsqreduced ( int isp )

static

◆ getpot_fieldnum()

static Real orb5x::Diagnostics::getpot_fieldnum	(	Real	s,
		Real	theta,
		Real	phi,
		int	fieldnum
	)

static

◆ init_generic_signoise()

static void orb5x::Diagnostics::init_generic_signoise ( )

static

Referenced by init_test_diagnostic_arrays().

◆ init_phase1_diagnostics()

static void orb5x::Diagnostics::init_phase1_diagnostics ( )

static

◆ init_test_diagnostic_arrays()

static void orb5x::Diagnostics::init_test_diagnostic_arrays ( int nspecies )

inlinestatic

Initialize all diagnostic arrays needed by diagnose() for testing.

This replaces initialize_diagnostics() which requires HDF5 and the full solver chain. Call after setting basic, diag, species globals.

References init_generic_signoise(), and moment1d_w.

◆ init_variance()

static void orb5x::Diagnostics::init_variance ( int nspecies )

inlinestatic

◆ initialize_diagnostics()

static void orb5x::Diagnostics::initialize_diagnostics ( )

static

◆ initialize_phasespace_diags()

static void orb5x::Diagnostics::initialize_phasespace_diags ( )

static

◆ initialize_source_3d_diags()

static void orb5x::Diagnostics::initialize_source_3d_diags ( )

static

◆ jdote()

static Real orb5x::Diagnostics::jdote	(	int	isp,
		Real	ut2,
		Real	vpt2,
		const std::vector< Real > &	vpar,
		const std::vector< Real > &	genelec,
		const std::vector< Real > &	elec_par,
		Real	wt,
		Real	bstar_inv,
		const std::vector< Real > &	bgrb,
		const std::vector< Real > &	vgb,
		const std::vector< Real > &	vpressure,
		const std::vector< Real > &	veb_f,
		const std::vector< Real > &	vexb,
		Real	expt_back,
		Real	eypt_back,
		Real	dvpadt0,
		Real	gyroapar
	)

static

◆ jdote_bg_ref()

static std::vector< std::vector< Real > > & orb5x::Diagnostics::jdote_bg_ref ( )

static

◆ jdote_fluct_ref()

static std::vector< std::vector< Real > > & orb5x::Diagnostics::jdote_fluct_ref ( )

static

◆ max_of_0d()

static void orb5x::Diagnostics::max_of_0d	(	int	isp,
		int	i,
		Real	to_add
	)

static

◆ max_of_0d_vexbnmax()

static void orb5x::Diagnostics::max_of_0d_vexbnmax	(	int	isp,
		Real	to_add
	)

static

◆ max_of_0d_vmax()

static void orb5x::Diagnostics::max_of_0d_vmax	(	int	isp,
		Real	to_add
	)

static

◆ max_of_0d_wmax()

static void orb5x::Diagnostics::max_of_0d_wmax	(	int	isp,
		Real	to_add
	)

static

◆ misc_avg_ref()

static std::vector< std::vector< Real > > & orb5x::Diagnostics::misc_avg_ref ( )

static

◆ mmin_f_serialize()

static void orb5x::Diagnostics::mmin_f_serialize ( )

static

◆ moment1d_f0_ref()

static std::vector< std::vector< std::vector< Real > > > & orb5x::Diagnostics::moment1d_f0_ref ( )

static

◆ moment1d_f_ref()

static std::vector< std::vector< std::vector< Real > > > & orb5x::Diagnostics::moment1d_f_ref ( )

static

◆ moment1d_w_ref()

static std::vector< std::vector< std::vector< Real > > > & orb5x::Diagnostics::moment1d_w_ref ( )

static

◆ moment2d_avg_ref()

static std::vector< std::vector< std::vector< std::vector< Real > > > > & orb5x::Diagnostics::moment2d_avg_ref ( )

static

◆ mpr_2d_ref()

static std::vector< std::vector< std::vector< std::vector< Real > > > > & orb5x::Diagnostics::mpr_2d_ref ( )

static

◆ mpr_es_calc()

static void orb5x::Diagnostics::mpr_es_calc	(	int	isp,
		int	iuloc,
		int	imuloc,
		Real	sigmat,
		Real	thetat,
		Real	wt,
		Real	ut2,
		Real	vpt2,
		Real	bstar_inv,
		const std::vector< Real > &	vpar,
		const std::vector< Real > &	genelec,
		const std::vector< Real > &	bgrb,
		const std::vector< Real > &	vgb,
		const std::vector< Real > &	vpressure,
		const std::vector< Real > &	veb_f
	)

static

◆ nl_do_diag()

static bool orb5x::Diagnostics::nl_do_diag	(	int	step_tot,
		int	nfreq
	)

static

◆ normalize_flux1d()

static void orb5x::Diagnostics::normalize_flux1d ( int isp )

static

◆ normalize_moment1d_f()

static void orb5x::Diagnostics::normalize_moment1d_f ( int isp )

static

◆ normalize_moment1d_f0()

static void orb5x::Diagnostics::normalize_moment1d_f0 ( int isp )

static

◆ normalize_moment1d_w()

static void orb5x::Diagnostics::normalize_moment1d_w ( int isp )

static

◆ normalize_moment2d()

static void orb5x::Diagnostics::normalize_moment2d ( int isp )

static

◆ normalize_poloidal1d()

static void orb5x::Diagnostics::normalize_poloidal1d ( int isp )

static

◆ omp_reduce_diag()

template<typename T >

static void orb5x::Diagnostics::omp_reduce_diag	(	T &	data,
		bool	use_max = `false`
	)

static

Generic diagnostic reduction interface (matches Fortran omp_reduce_diag)

In C++ with Kokkos, this is primarily a documentation marker since reductions are handled differently than in Fortran OpenMP.

Template Parameters

T	Diagnostic array type (Real, vector<Real>, etc.)

Parameters

data	Reference to diagnostic data
use_max	If true, compute max; otherwise sum

◆ omp_reduce_diag0d()

static void orb5x::Diagnostics::omp_reduce_diag0d	(	Real &	data,
		bool	use_max = `false`
	)

static

Reduce 0D diagnostic array (single value per species)

Parameters

data	Reference to diagnostic value
use_max	If true, compute max; otherwise sum

◆ omp_reduce_diag1d()

static void orb5x::Diagnostics::omp_reduce_diag1d	(	std::vector< Real > &	data,
		bool	use_max = `false`
	)

static

Reduce 1D diagnostic array.

Parameters

data	Reference to 1D vector
use_max	If true, compute max; otherwise sum

◆ omp_reduce_diag2d()

static void orb5x::Diagnostics::omp_reduce_diag2d	(	std::vector< std::vector< Real > > &	data,
		bool	use_max = `false`
	)

static

Reduce 2D diagnostic array.

Parameters

data	Reference to 2D vector
use_max	If true, compute max; otherwise sum

◆ omp_reduce_diag3d()

static void orb5x::Diagnostics::omp_reduce_diag3d	(	std::vector< std::vector< std::vector< Real > > > &	data,
		bool	use_max = `false`
	)

static

Reduce 3D diagnostic array.

Parameters

data	Reference to 3D vector
use_max	If true, compute max; otherwise sum

◆ phasespace_3d_ref()

static std::vector< std::vector< std::vector< std::vector< std::vector< Real > > > > > & orb5x::Diagnostics::phasespace_3d_ref ( )

static

◆ polarisation_fieldcalc()

static void orb5x::Diagnostics::polarisation_fieldcalc ( int isp )

static

◆ poloidal1d_f_ref()

static std::vector< std::vector< std::vector< Real > > > & orb5x::Diagnostics::poloidal1d_f_ref ( )

static

◆ poloidal1d_w_ref()

static std::vector< std::vector< std::vector< Real > > > & orb5x::Diagnostics::poloidal1d_w_ref ( )

static

◆ profsphi()

static void orb5x::Diagnostics::profsphi	(	Real	theta,
		int	fieldnum,
		std::vector< std::vector< Real > > &	pot_sp
	)

static

◆ profsth()

static void orb5x::Diagnostics::profsth	(	Real	phi,
		int	fieldnum,
		int	ns0,
		std::vector< std::vector< Real > > &	pot_st,
		std::vector< std::vector< Real > > *	xc = `nullptr`,
		std::vector< std::vector< Real > > *	zc = `nullptr`
	)

static

◆ put3d_dens()

static void orb5x::Diagnostics::put3d_dens	(	Real	time,
		bool	do_moments = `false`
	)

static

◆ put3d_h5s()

static void orb5x::Diagnostics::put3d_h5s	(	Real	time,
		int	diag_select,
		int	field_select,
		int	isp = `-1`
	)

static

◆ putarr()

static void orb5x::Diagnostics::putarr	(	const std::string &	path,
		const Real *	array,
		size_t	length,
		const std::string &	title = `""`
	)

static

◆ putarr_attime_1d()

static void orb5x::Diagnostics::putarr_attime_1d	(	const std::string &	path,
		const Real *	array,
		size_t	length,
		Real	time
	)

static

◆ putarr_attime_2d()

static void orb5x::Diagnostics::putarr_attime_2d	(	const std::string &	path,
		const Real *	array,
		size_t	dim1,
		size_t	dim2,
		Real	time
	)

static

◆ read_restart_state()

static void orb5x::Diagnostics::read_restart_state ( int datn )

static

◆ rhs_f_serialize()

static void orb5x::Diagnostics::rhs_f_serialize ( const std::vector< std::vector< std::complex< Real > > > & rhs_f_ptr )

static

◆ sampling_2d_ref()

static std::vector< std::vector< std::vector< std::vector< Real > > > > & orb5x::Diagnostics::sampling_2d_ref ( )

static

◆ set_buf()

static void orb5x::Diagnostics::set_buf ( Kokkos::View< Real ** > v )

inlinestatic

◆ set_buf_pic()

static void orb5x::Diagnostics::set_buf_pic ( Kokkos::View< Real *** > v )

inlinestatic

◆ set_dSdt_heat()

static void orb5x::Diagnostics::set_dSdt_heat	(	int	isp,
		Real	value
	)

static

◆ set_dSdt_nc()

static void orb5x::Diagnostics::set_dSdt_nc	(	int	isp,
		Real	value
	)

static

◆ set_dSdt_nc_corr()

static void orb5x::Diagnostics::set_dSdt_nc_corr	(	int	isp,
		Real	value
	)

static

◆ set_efield()

static void orb5x::Diagnostics::set_efield	(	int	isp,
		int	component,
		Real	value
	)

static

◆ set_efield_av()

static void orb5x::Diagnostics::set_efield_av	(	int	isp,
		int	component,
		Real	value
	)

static

◆ set_efield_fft()

static void orb5x::Diagnostics::set_efield_fft	(	int	isp,
		int	component,
		Real	value
	)

static

◆ set_generic_spectrum2d_avg()

static void orb5x::Diagnostics::set_generic_spectrum2d_avg	(	int	idiag,
		int	i,
		int	j,
		Real	value
	)

static

◆ set_ibuf()

static void orb5x::Diagnostics::set_ibuf ( int val )

inlinestatic

◆ set_inner_edge_losses()

static void orb5x::Diagnostics::set_inner_edge_losses	(	int	isp,
		int	component,
		Real	value
	)

static

◆ set_misc_avg()

static void orb5x::Diagnostics::set_misc_avg	(	int	isp,
		int	idx,
		Real	val
	)

inlinestatic

◆ set_nsbound_in()

static void orb5x::Diagnostics::set_nsbound_in	(	int	isp,
		int	value
	)

static

◆ set_nsbound_out()

static void orb5x::Diagnostics::set_nsbound_out	(	int	isp,
		int	value
	)

static

◆ set_outer_edge_losses()

static void orb5x::Diagnostics::set_outer_edge_losses	(	int	isp,
		int	component,
		Real	value
	)

static

◆ set_signal2noise()

static void orb5x::Diagnostics::set_signal2noise	(	Real	sn,
		Real	sn_nozf
	)

static

◆ set_signal2noise_em()

static void orb5x::Diagnostics::set_signal2noise_em	(	Real	sn,
		Real	sn_nozf
	)

static

◆ set_spectrum2d_avg()

static void orb5x::Diagnostics::set_spectrum2d_avg	(	int	isp,
		int	idiag,
		int	i,
		int	j,
		Real	value
	)

static

◆ set_variance()

static void orb5x::Diagnostics::set_variance	(	int	isp,
		int	index,
		Real	value
	)

static

◆ snapshot_variance()

static void orb5x::Diagnostics::snapshot_variance ( int isp )

static

◆ source_diag1d_avg_ref()

static std::vector< std::vector< std::vector< Real > > > & orb5x::Diagnostics::source_diag1d_avg_ref ( )

static

◆ strong_diagnostic_output()

static void orb5x::Diagnostics::strong_diagnostic_output	(	int	isp,
		int	ip,
		Real	psi0t,
		Real	temp2,
		Real	ze,
		Real	vecrossb_f2,
		Real	pot_equil,
		Real	zf0,
		Real	zvth2_inv,
		Real	dpotdpsi,
		Real	vdr,
		Real	rhs
	)

static

◆ sum_entropy_fluctuation()

static void orb5x::Diagnostics::sum_entropy_fluctuation	(	int	isp,
		Real	wt,
		Real	zf0,
		Real	q_vgc_dot_genelec,
		Real	zvth2_inv,
		Real	df0_dpsi_prof,
		Real	df0_dchi_prof,
		Real	dpsi_prof_dt
	)

static

◆ sum_fluid_moments()

static void orb5x::Diagnostics::sum_fluid_moments	(	int	isp,
		Real	sigmat,
		Real	chit,
		Real	phit,
		Real	wt,
		Real	ut,
		Real	ut2,
		Real	vpt2
	)

static

◆ sum_in_radial_bins_island()

static void orb5x::Diagnostics::sum_in_radial_bins_island	(	int	isp,
		int	irloc,
		int	ipol,
		Real	ut,
		const std::vector< Real > &	gradpsi0,
		Real	htildex,
		Real	htildey,
		Real	ze,
		Real	zf0,
		Real	wt,
		Real	dPsidt1,
		Real	ffinit_tmp1,
		Real	ffinit_tmp2,
		Real	ffinit_tmp3,
		Real	ffinit_tmp4
	)

static

◆ sum_moment2d()

static void orb5x::Diagnostics::sum_moment2d	(	int	isp,
		int	irloc,
		int	ithetaloc,
		Real	wt,
		Real	ffinit_tmp1,
		Real	ffinit_tmp2,
		Real	ffinit_tmp3,
		Real	ffinit_tmp4
	)

static

◆ sum_particles_in_poloidal_bins()

static void orb5x::Diagnostics::sum_particles_in_poloidal_bins	(	int	isp,
		int	ithetaloc,
		Real	wt,
		Real	ffinit_tmp1,
		Real	ffinit_tmp2,
		Real	ffinit_tmp3,
		Real	ffinit_tmp4,
		Real	wt_tmp1,
		Real	wt_tmp2,
		Real	wt_tmp3
	)

static

◆ sum_particles_in_radial_bins()

static void orb5x::Diagnostics::sum_particles_in_radial_bins	(	int	isp,
		int	ip,
		int	irloc,
		Real	zf0,
		Real	dPsidt1,
		Real	dPsidt0,
		Real	ze,
		Real	wt,
		Real	ut,
		Real	ut2,
		Real	vpt2,
		Real	rt2,
		const std::vector< Real > &	vpar,
		Real	zf0_tmp1,
		Real	zf0_tmp2,
		Real	zf0_tmp3,
		Real	sigmat,
		Real	zf0_local,
		Real	grsigma2,
		Real	grsigmagrchi,
		Real	b,
		const std::vector< Real > &	exh,
		Real	wt_tmp1,
		Real	wt_tmp2,
		Real	wt_tmp3,
		const std::vector< Real > &	vexb,
		Real	ffinit_tmp1,
		Real	ffinit_tmp2,
		Real	ffinit_tmp3,
		Real	ffinit_tmp4,
		Real	ffinit_tmp5,
		Real	jdote_tot,
		const std::vector< Real > &	eloc
	)

static

◆ sum_spectrum2d_avg()

static Real orb5x::Diagnostics::sum_spectrum2d_avg	(	int	isp,
		int	idiag,
		int	ndim,
		int	mdim
	)

static

◆ sum_velocities()

static void orb5x::Diagnostics::sum_velocities	(	int	isp,
		int	iuloc,
		int	imuloc,
		Real	wt,
		Real	zf0,
		Real	pvol
	)

static

◆ test_particle_output()

static void orb5x::Diagnostics::test_particle_output	(	int	isp,
		int	ip,
		Real	psi0t,
		Real	ze,
		Real	pot_equil,
		Real	wt,
		Real	zvth2,
		Real	nval,
		Real	pvol_updated,
		Real	zf0
	)

static

◆ vel1d_avg_ref()

static std::vector< std::vector< std::vector< Real > > > & orb5x::Diagnostics::vel1d_avg_ref ( )

static

◆ vel2d_avg_ref()

static std::vector< std::vector< std::vector< std::vector< Real > > > > & orb5x::Diagnostics::vel2d_avg_ref ( )

static

◆ velocity_space_diag_init()

static void orb5x::Diagnostics::velocity_space_diag_init ( )

static

◆ vmax_ref()

static std::vector< Real > & orb5x::Diagnostics::vmax_ref ( )

static

◆ wmax_ref()

static std::vector< Real > & orb5x::Diagnostics::wmax_ref ( )

static

◆ write_output()

static void orb5x::Diagnostics::write_output	(	int	step,
		Real	time
	)

static

◆ write_restart_state()

static void orb5x::Diagnostics::write_restart_state ( int datn )

static

◆ zero_generic_spectrum2d_avg()

static void orb5x::Diagnostics::zero_generic_spectrum2d_avg	(	int	idiag,
		int	ndim,
		int	mdim
	)

static

◆ zero_spectrum2d_avg()

static void orb5x::Diagnostics::zero_spectrum2d_avg	(	int	isp,
		int	idiag,
		int	ndim,
		int	mdim
	)

static

Member Data Documentation

◆ apaloc

std::vector<Real> orb5x::Diagnostics::apaloc

inlinestatic

◆ FIELD_APAR

constexpr int orb5x::Diagnostics::FIELD_APAR = 2

staticconstexpr

◆ FIELD_APAR_HAM

constexpr int orb5x::Diagnostics::FIELD_APAR_HAM = 3

staticconstexpr

◆ FIELD_APAR_SYMPL

constexpr int orb5x::Diagnostics::FIELD_APAR_SYMPL = 4

staticconstexpr

◆ FIELD_DENS

constexpr int orb5x::Diagnostics::FIELD_DENS = 5

staticconstexpr

◆ FIELD_PHI

constexpr int orb5x::Diagnostics::FIELD_PHI = 1

staticconstexpr

◆ FIELD_USER

constexpr int orb5x::Diagnostics::FIELD_USER = 6

staticconstexpr

◆ moment1d_w

std::vector<std::vector<std::vector<Real> > > orb5x::Diagnostics::moment1d_w

inlinestatic

Referenced by init_test_diagnostic_arrays().

◆ out

std::vector<bool> orb5x::Diagnostics::out

inlinestatic

◆ pe_phi_cuts

std::array<int, 3> orb5x::Diagnostics::pe_phi_cuts = {0, 0, 0}

inlinestatic

Referenced by Diagnostics().

◆ phi00

std::vector<Real> orb5x::Diagnostics::phi00

inlinestatic

◆ phi0_chi

std::vector<Real> orb5x::Diagnostics::phi0_chi

inlinestatic

◆ phibar

std::vector<Real> orb5x::Diagnostics::phibar

inlinestatic

◆ philoc

std::vector<Real> orb5x::Diagnostics::philoc

inlinestatic

◆ philoc_hfs

std::vector<Real> orb5x::Diagnostics::philoc_hfs

inlinestatic

◆ rho00

std::vector<std::vector<Real> > orb5x::Diagnostics::rho00

inlinestatic

The documentation for this class was generated from the following file:

diagnostics.hpp

ORB5X 1.0.0 Performance-portable global electromagnetic gyrokinetic PIC code

Classes

Public Member Functions

Static Public Member Functions

Static Public Attributes

Constructor & Destructor Documentation

◆ Diagnostics()

Member Function Documentation

◆ accumulate_diagnostics()

◆ accumulate_displacements()

◆ accumulate_flux1d_f0()

◆ accumulate_flux1d_w()

◆ accumulate_moment1d_f()

◆ accumulate_moment1d_f0()

◆ accumulate_moment1d_w()

◆ add_efield()

◆ add_efield_av()

◆ add_to_0d_vexbnavg()

◆ add_to_entropy_fluct()

◆ add_to_jdote_bg()

◆ add_to_jdote_fluct()

◆ add_trap_frac()

◆ append_placeholder_slices()

◆ append_scalar()

◆ append_stat_int()

◆ clear_diagnostics()

◆ clear_entropy_diag()

◆ clear_jdote()

◆ clear_jdote_fluct()

◆ createg_1D()

◆ createg_1Dms()

◆ createg_2D()

◆ createg_2Dms()

◆ createg_3D()

◆ createg_3Dms()

◆ createg_3Dz()

◆ createg_3Dzms()

◆ destroyStaticViews()

◆ diag3d_on_fluid_moments()

◆ diag3d_spectrum()

◆ diag_fields_torpol()

◆ diag_fields_torpol_init()

◆ diag_fulltorus()

◆ diag_fulltorus_init()

◆ diagnose()

◆ diagnose_phasespace()

◆ diagnose_sampling()

◆ diagnostics_after_loop()

◆ displacement_avg_ref()

◆ displacement_exb_avg_ref()

◆ displacement_exb_max_ref()

◆ displacement_max_ref()

◆ electron_fluxes_moments()

◆ entropy_fluct_avg_ref()

◆ fluid_moments_ref()

◆ flush0d()

◆ flux1d_f0_ref()

◆ flux1d_w_ref()

◆ get_adiab()

◆ get_buf()

◆ get_buf_pic()

◆ get_cum_non_cg_bins()

◆ get_cum_non_cg_markers()

◆ get_dSdt_heat()

◆ get_dSdt_nc()

◆ get_dSdt_nc_corr()

◆ get_efield()

◆ get_efield_av()

◆ get_efield_fft()

◆ get_entropy_fluct_avg()

◆ get_flux0d_f0()

◆ get_flux0d_w()

◆ get_generic_signoise_avg()

◆ get_generic_signoise_size()

◆ get_generic_spectrum2d_avg()

◆ get_ibuf()

◆ get_inner_edge_losses()

◆ get_irloc_in()

◆ get_jdote_bg()

◆ get_jdote_fluct()

◆ get_misc_avg()